PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020673786.2

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

TCP

Protein Properties

Length: 389aa MW: 42070.8 Da PI: 8.6128

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020673786.2	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	116.9	2.6e-36	45	177	3	128
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....ssssasec......eaesssssasnss 86 g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk+++WL+++a +ai +l+++ + ++a+ + ++ss ++ XP_020673786.2 45 GGKDRHSKVWTAKGLRDRRVRLSVSTAIQFYDLQDRLGYDQPSKAVDWLIKAADAAISDLPELdgntfPLPPAMVFpghinhPDGSSAIDQQ--- 136 78*************************************************************99888555553333333212333333333... PP TCP 87 sgkaaksaakskksqksaasalnlak.esrakarararertre 128 + +++++s+ s++s+ s+l+l++ ++ra ar+r +++++ XP_020673786.2 137 --ISPSKSTCSSASETSKGSTLSLSRcQTRATARERTSKEKEN 177 ..55666678888999999889998888888888775553333 PP

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence
MEKNGIHSSK RFRRDEENGD VKGAGGLRPW QNASSRIIRV SRVSGGKDRH SKVWTAKGLR 60 DRRVRLSVST AIQFYDLQDR LGYDQPSKAV DWLIKAADAA ISDLPELDGN TFPLPPAMVF 120 PGHINHPDGS SAIDQQISPS KSTCSSASET SKGSTLSLSR CQTRATARER TSKEKENELD 180 AAAHQHPNLT TPSSFTELLT AGSTTEVAGC GTGFGLKQLR PQLATSTADY FGQAGIFGQA 240 HKIPQLTPGY SSMLHVGNNT HMGMGMMSYN AAAVGEHQDT QQYSFMQDHV IPVAAVAPGV 300 DYDLNVSVSS VFTGFNRGTL QSNSPHHHHL VDGANLPFFF GSSLPIAAAE GASSENQYLG 360 GFNGRLQVFC NEAHRHPKLK GEGKDRRPQ

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence

MEKNGIHSSK RFRRDEENGD VKGAGGLRPW QNASSRIIRV SRVSGGKDRH SKVWTAKGLR  60
DRRVRLSVST AIQFYDLQDR LGYDQPSKAV DWLIKAADAA ISDLPELDGN TFPLPPAMVF  120
PGHINHPDGS SAIDQQISPS KSTCSSASET SKGSTLSLSR CQTRATARER TSKEKENELD  180
AAAHQHPNLT TPSSFTELLT AGSTTEVAGC GTGFGLKQLR PQLATSTADY FGQAGIFGQA  240
HKIPQLTPGY SSMLHVGNNT HMGMGMMSYN AAAVGEHQDT QQYSFMQDHV IPVAAVAPGV  300
DYDLNVSVSS VFTGFNRGTL QSNSPHHHHL VDGANLPFFF GSSLPIAAAE GASSENQYLG  360
GFNGRLQVFC NEAHRHPKLK GEGKDRRPQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18390.1	7e-44	TCP family protein