PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020673808.2

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C2H2

Protein Properties

Length: 369aa MW: 43566 Da PI: 9.4486

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020673808.2	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.1	6.6e-05	22	44	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C++Cg + s ks+L++Hi +H XP_020673808.2 22 YYCEYCGICRSKKSLLRSHILSH 44 89*******************96 PP
2	zf-C2H2	15.4	5.4e-05	69	91	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ Cg sF + +L +H+++H XP_020673808.2 69 HACEECGASFWKPAHLAQHMKSH 91 67********************9 PP
3	zf-C2H2	18.4	5.9e-06	97	121	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 + Cp dC s++rk++L+rH+ +H XP_020673808.2 97 FACPvkDCYFSYRRKDHLNRHLLKH 121 78*********************99 PP
4	zf-C2H2	16.5	2.4e-05	126	151	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 + Cp C++ F + nLkrH + H XP_020673808.2 126 FDCPvqSCNRAFAFQGNLKRHVKEiH 151 679999****************9988 PP
5	zf-C2H2	17.2	1.4e-05	163	187	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++C+ Cgk F+ s Lk+H+ +H XP_020673808.2 163 HTCEepGCGKIFKFASRLKKHQDSH 187 789999****************998 PP
6	zf-C2H2	19.7	2.2e-06	254	278	2	23
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 kC+ C +sFs ksnL++Hi+ H XP_020673808.2 254 KCSflGCEQSFSKKSNLNKHIKAvH 278 799999***************9888 PP

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence
METEAVKEND KQRFIFRDIR RYYCEYCGIC RSKKSLLRSH ILSHHKEEIQ MVKLDEVSAF 60 KAASQKVQHA CEECGASFWK PAHLAQHMKS HSVERPFACP VKDCYFSYRR KDHLNRHLLK 120 HKGKVFDCPV QSCNRAFAFQ GNLKRHVKEI HDDESPCEAE KRHTCEEPGC GKIFKFASRL 180 KKHQDSHLKV EFLEIFCGEP LCMKPFTNSE CLKAHIQSCH KYVKCEICGA QKLRKNFKRH 240 QRAHEGVISK ERIKCSFLGC EQSFSKKSNL NKHIKAVHEE LRPFRCRTSG CQQRFPYKHV 300 RDNHEKTHVY VQGNFFEADE QWRSRPRGGR KRERITIEAL TRKRVVPLDR SSIMENGADY 360 LRWLLDDDE

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence

METEAVKEND KQRFIFRDIR RYYCEYCGIC RSKKSLLRSH ILSHHKEEIQ MVKLDEVSAF  60
KAASQKVQHA CEECGASFWK PAHLAQHMKS HSVERPFACP VKDCYFSYRR KDHLNRHLLK  120
HKGKVFDCPV QSCNRAFAFQ GNLKRHVKEI HDDESPCEAE KRHTCEEPGC GKIFKFASRL  180
KKHQDSHLKV EFLEIFCGEP LCMKPFTNSE CLKAHIQSCH KYVKCEICGA QKLRKNFKRH  240
QRAHEGVISK ERIKCSFLGC EQSFSKKSNL NKHIKAVHEE LRPFRCRTSG CQQRFPYKHV  300
RDNHEKTHVY VQGNFFEADE QWRSRPRGGR KRERITIEAL TRKRVVPLDR SSIMENGADY  360
LRWLLDDDE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72050.2	1e-116	C2H2 family protein