PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020673826.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family HD-ZIP
Protein Properties Length: 333aa    MW: 37889.1 Da    PI: 9.6734
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020673826.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox611.9e-19127180356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k+++ft++q++ Le +Fe++ ++  +++++LAk+lgL+ rqV +WFqN+Ra++k
  XP_020673826.1 127 KKRRFTETQVKSLEVMFEEQAKLEPRKKQQLAKELGLQPRQVAIWFQNKRARWK 180
                     5669*************************************************9 PP
2HD-ZIP_I/II114.75.6e-37126218193
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     ekkrr+++ qvk+LE +Fee+ kLep++K++la+eLglqprqva+WFqn+RAR+k+kqlE+ y+aL + ydal+++ e+L ++++ L  ++++
  XP_020673826.1 126 EKKRRFTETQVKSLEVMFEEQAKLEPRKKQQLAKELGLQPRQVAIWFQNKRARWKSKQLERAYAALSADYDALRSSFESLLHQKNVLSVQVQR 218
                     69*************************************************************************************999875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    
MRNKMLSNSY VESIERQLAK PRRASPSRQL PRPPFLHWLS TLLPPFRQLI YISRQTTPAK  60
AFLNLPTLSL PVFHECWLQM MMDSNAVGNL IDIMMLSSSN SSSSGCENDA AASAAAAAAA  120
AELAVEKKRR FTETQVKSLE VMFEEQAKLE PRKKQQLAKE LGLQPRQVAI WFQNKRARWK  180
SKQLERAYAA LSADYDALRS SFESLLHQKN VLSVQVQRLA EMVESNNQRE KKESSKQIDF  240
TVTRSEAEKT PILSLSSNKN NYDVERKVNH LSVGKEVEHH LHKTKEQAGG GRILVSDDST  300
EQKQFCFHST GWPSDQLMNG GGCSQWWEFL SYE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.12e-31HD-ZIP family protein