PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020673850.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 373aa MW: 41852.5 Da PI: 6.173

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020673850.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.7	1.1e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l++ ++++G g+W+++++ g+ R++k+c++rw +yl XP_020673850.1 14 KGLWSPEEDEKLLKHITKYGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP
2	Myb_DNA-binding	42.6	1.4e-13	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg ++++E+ l+++++ lG++ W+ Ia+ ++ gRt++++k+ w++ XP_020673850.1 67 RGTFSQQEENLIIELHGILGNR-WSQIAAQLP-GRTDNEIKNLWNS 110 899*****************.*****.*******9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence
MGRHSCCYKQ KLRKGLWSPE EDEKLLKHIT KYGHGCWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGTF SQQEENLIIE LHGILGNRWS QIAAQLPGRT DNEIKNLWNS CIKKKLRQRG 120 IDPNTHKPFA EIEGQLAEID SADQPAAEPE PAKHLVQPPE TGIPNNSVRP ANSSAASYFS 180 LPNLTYSPDC GSNIGQIQQF WYNQSGKIFS NNNSNSEFSF NSASSLLPSV PRSTVSTSKE 240 PKPLTSLLME NSPSGFYWET GNSSNSSASS GSNDPLFDGS IFQWTQLIPE KDTNVQLQEE 300 TDDLKWSEYL NGSVPLSTEL QNQNPDLCNG MKAEEQFGID GLGIWLQNHQ QQQQQQQQAS 360 DNYGKDCQRD IIC

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence

MGRHSCCYKQ KLRKGLWSPE EDEKLLKHIT KYGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGTF SQQEENLIIE LHGILGNRWS QIAAQLPGRT DNEIKNLWNS CIKKKLRQRG  120
IDPNTHKPFA EIEGQLAEID SADQPAAEPE PAKHLVQPPE TGIPNNSVRP ANSSAASYFS  180
LPNLTYSPDC GSNIGQIQQF WYNQSGKIFS NNNSNSEFSF NSASSLLPSV PRSTVSTSKE  240
PKPLTSLLME NSPSGFYWET GNSSNSSASS GSNDPLFDGS IFQWTQLIPE KDTNVQLQEE  300
TDDLKWSEYL NGSVPLSTEL QNQNPDLCNG MKAEEQFGID GLGIWLQNHQ QQQQQQQQAS  360
DNYGKDCQRD IIC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01680.3	1e-86	MYB family protein