PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020673883.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

FAR1

Protein Properties

Length: 839aa MW: 96017.7 Da PI: 7.6209

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020673883.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	83.1	4.7e-26	48	135	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn+YA e+GFs+r+s+ + ++ ge+++rtf+Cs+eg r ++++k e+ +++r etr++C+aklk++++ +gk++v ++ eHnHela XP_020673883.1 48 DFYNRYAFEMGFSIRRSSRHLLRKGGEVKDRTFCCSREGIRGKDRRK-ETVQTPRYETRCNCNAKLKISLR-NGKYYVFQFIPEHNHELA 135 6****************************************9999.99999**************.**************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 839 aa Download sequence
MEHDSGEQCP AGINECSNGD LEQVAICFPD EWIPKVDMEF ETEQEAYDFY NRYAFEMGFS 60 IRRSSRHLLR KGGEVKDRTF CCSREGIRGK DRRKETVQTP RYETRCNCNA KLKISLRNGK 120 YYVFQFIPEH NHELASRTQV HRLRSHRHII PAQPVTTLGI SPKPTFDLMS AEVDGHENLG 180 FILNFGNDLQ AEQPLTVKLG DSGGVLEYLE KMQREDPKFF YSVQLDKLHT ATNIFWADSR 240 MIADYKNFGD VVCIDTTYKR FNVDNRLFGL LVGVNNHKQL IVFGSFLLDD ETSESFKWMF 300 STFLKAMLGN KPKTVLTDDN IAMAKAIKMC MPEANHRICV WQIGQNICQQ LSVVVRDYKN 360 FCIDFSSCLY DHDEEAAFID SWNAMLVKYK LVGNACLDRL FEKKEQWALV YDRKVFYAGI 420 YNAQRNDNIS KELKNFLNAE NDILLLFKHL QRLVEGRRYE EIKADIAASH SMPKLKFDLG 480 ILKHAARTYT PAIFKMFQDE LLQTWNCDMH FFGETGSIST YKLKTNGEIQ EHTVMFDSSK 540 VSVECSCKNF EFIGILCTHA LKVLDFKNIR TIPVCYLLKR WMKDAKMVGV VGSCTPCLDP 600 KIELRRRYKE LCRLFVQVAA KAAETEETYA IAAGQINKLL QEVEKRLRKR YKPDPEGEHT 660 ELNALEVELG QTMEGDVSSR EQMQTQKLKG MKLTANKKKK KIRPQQISVG TAEQNLSAIH 720 LNNDVYNPTS DPVQRNASSS MGREAPQDNF ARQHPVTANA NLWLDLSQPP TVGAHTSLIA 780 DSFQLQAVQA SSFSPGLYQI HNPATTIPIN QQGHLNMLQQ FEPQLHSLSR QLFSGSAEG

Sequence ? help Back to Top

Protein Sequence Length: 839 aa Download sequence

MEHDSGEQCP AGINECSNGD LEQVAICFPD EWIPKVDMEF ETEQEAYDFY NRYAFEMGFS  60
IRRSSRHLLR KGGEVKDRTF CCSREGIRGK DRRKETVQTP RYETRCNCNA KLKISLRNGK  120
YYVFQFIPEH NHELASRTQV HRLRSHRHII PAQPVTTLGI SPKPTFDLMS AEVDGHENLG  180
FILNFGNDLQ AEQPLTVKLG DSGGVLEYLE KMQREDPKFF YSVQLDKLHT ATNIFWADSR  240
MIADYKNFGD VVCIDTTYKR FNVDNRLFGL LVGVNNHKQL IVFGSFLLDD ETSESFKWMF  300
STFLKAMLGN KPKTVLTDDN IAMAKAIKMC MPEANHRICV WQIGQNICQQ LSVVVRDYKN  360
FCIDFSSCLY DHDEEAAFID SWNAMLVKYK LVGNACLDRL FEKKEQWALV YDRKVFYAGI  420
YNAQRNDNIS KELKNFLNAE NDILLLFKHL QRLVEGRRYE EIKADIAASH SMPKLKFDLG  480
ILKHAARTYT PAIFKMFQDE LLQTWNCDMH FFGETGSIST YKLKTNGEIQ EHTVMFDSSK  540
VSVECSCKNF EFIGILCTHA LKVLDFKNIR TIPVCYLLKR WMKDAKMVGV VGSCTPCLDP  600
KIELRRRYKE LCRLFVQVAA KAAETEETYA IAAGQINKLL QEVEKRLRKR YKPDPEGEHT  660
ELNALEVELG QTMEGDVSSR EQMQTQKLKG MKLTANKKKK KIRPQQISVG TAEQNLSAIH  720
LNNDVYNPTS DPVQRNASSS MGREAPQDNF ARQHPVTANA NLWLDLSQPP TVGAHTSLIA  780
DSFQLQAVQA SSFSPGLYQI HNPATTIPIN QQGHLNMLQQ FEPQLHSLSR QLFSGSAEG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-103	FAR1 family protein