PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020673967.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

bHLH

Protein Properties

Length: 459aa MW: 47033.4 Da PI: 6.4211

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020673967.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.9	6.4e-12	258	303	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq XP_020673967.1 258 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 303 99*********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 459 aa Download sequence
MQPSTREMQS MGAPMNGMPG SSTPSSTAAS ASHISLHELQ NGNGQAHIQN PNLHGSSSQF 60 DPSAASNDDF FDQMFSNIPS WPDLGKSPWD LSNSAAAASG YDESSLLASR LRQYQISSGD 120 GGSPVGKSMM LPLSAQQQQQ FLLSAIGGRP TASDPDSSLL TPLPLSLASA GHGSDSDTSF 180 KSPNSTTADG LYNGFGSGSL QRSPNQPQHF HQAQGAAIPQ QSFGAVPPAA VSTPAGAGAP 240 AAPRQRVRAR RGQATDPHSI AERLRRERIA ERMKALQELV PNANKTDKAS MLDEIIDYVK 300 FLQLQVKVLS MSRLGGAAAV APLVADISSE GGAAVGRGSP AANENMSATE HQVAKLMEED 360 MGSAMQYLQG KGLCLMPISL ASAISTASCR GPTSSLLAGS GACAINNLAA LIPGIPVGGD 420 APSSPSLSVL TVQSAVAGGC ETDLSRSSGK DGAASVSKP

Sequence ? help Back to Top

Protein Sequence Length: 459 aa Download sequence

MQPSTREMQS MGAPMNGMPG SSTPSSTAAS ASHISLHELQ NGNGQAHIQN PNLHGSSSQF  60
DPSAASNDDF FDQMFSNIPS WPDLGKSPWD LSNSAAAASG YDESSLLASR LRQYQISSGD  120
GGSPVGKSMM LPLSAQQQQQ FLLSAIGGRP TASDPDSSLL TPLPLSLASA GHGSDSDTSF  180
KSPNSTTADG LYNGFGSGSL QRSPNQPQHF HQAQGAAIPQ QSFGAVPPAA VSTPAGAGAP  240
AAPRQRVRAR RGQATDPHSI AERLRRERIA ERMKALQELV PNANKTDKAS MLDEIIDYVK  300
FLQLQVKVLS MSRLGGAAAV APLVADISSE GGAAVGRGSP AANENMSATE HQVAKLMEED  360
MGSAMQYLQG KGLCLMPISL ASAISTASCR GPTSSLLAGS GACAINNLAA LIPGIPVGGD  420
APSSPSLSVL TVQSAVAGGC ETDLSRSSGK DGAASVSKP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	263	268	RLRRER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	7e-52	bHLH family protein