PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020674080.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family YABBY
Protein Properties Length: 194aa    MW: 21683.9 Da    PI: 9.396
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020674080.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY139.63.5e-4321462162
           YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsv 96 
                     d+ s se++Cyv+C++C+t+lav vP + +  +vtv+CGhC sl  +n +   q+l + +h          ++l ++  n+    + ++s  +s 
  XP_020674080.1   2 DLGSPSEHLCYVRCAYCTTVLAVGVPCKRMTDTVTVKCGHCNSLSFLNPKPPFQTLCSDHH----------QTLLQRPCNFLW--KGQHSLASSS 84 
                     66789***************************************99999999999988877..........444444444433..3333333333 PP

           YABBY  97 sseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWah 162
                     s+      ed + + vp v++PPek+ r Psaynrf++eeiqrika+ Pdi hreafs+aaknWa 
  XP_020674080.1  85 ST----VAEDMNPKAVPFVVKPPEKKHRLPSAYNRFMREEIQRIKAAQPDIPHREAFSTAAKNWAK 146
                     33....1222233334569**********************************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    
MDLGSPSEHL CYVRCAYCTT VLAVGVPCKR MTDTVTVKCG HCNSLSFLNP KPPFQTLCSD  60
HHQTLLQRPC NFLWKGQHSL ASSSSTVAED MNPKAVPFVV KPPEKKHRLP SAYNRFMREE  120
IQRIKAAQPD IPHREAFSTA AKNWAKCDPR ALFYSATGTS GARRATTAIQ QEKRSGVPVE  180
SFEVSKHGQL HRME
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.11e-51YABBY family protein