PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020674146.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

TCP

Protein Properties

Length: 411aa MW: 45231.5 Da PI: 9.8238

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020674146.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	118	1.2e-36	124	206	3	85
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasns 85 g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+q+ak+ai+el++ ++ ++s++e+ ss++ ++ XP_020674146.1 124 GRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIQNAKAAIDELAEHPAWHPSSAEEISSKKPMPQP 206 89*************************************************************66666444222222222211 PP

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence
MAKYFRRGSR QSRISAHRRV LKQVSLRTRK PVELKLDPHF RLPIPNRRGE EETEQAEQGV 60 GFHIHQLKKP FFSSSPSAAA TASSDYVPPA PAQRKHSYSR LSGMRSSAGE IVEVQGGHIV 120 RSIGRKDRHS KVCTAKGPRD RRVRLSAHTA IQFYDVQDRL GYDRPSKAVD WLIQNAKAAI 180 DELAEHPAWH PSSAEEISSK KPMPQPEPAA SSAFSFSNIA SSSFLPPSLD SDTIADTIKS 240 FFPVTSAATV HDGSNKSHHF QDLRLSLQSI QDRTFDHPNP IPHHHFSFDT VPAGFADQNP 300 RMVSWNAVAG GSEGGAGAYT FNMPPVLFGQ GQLPTQRGPL QSSTTSLLRP WMEPIDHQMQ 360 QALIPEVSSI GFSSGGRNFS GFRFPAEIHS DEVLDDGISD KPSSGSSASH Y

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence

MAKYFRRGSR QSRISAHRRV LKQVSLRTRK PVELKLDPHF RLPIPNRRGE EETEQAEQGV  60
GFHIHQLKKP FFSSSPSAAA TASSDYVPPA PAQRKHSYSR LSGMRSSAGE IVEVQGGHIV  120
RSIGRKDRHS KVCTAKGPRD RRVRLSAHTA IQFYDVQDRL GYDRPSKAVD WLIQNAKAAI  180
DELAEHPAWH PSSAEEISSK KPMPQPEPAA SSAFSFSNIA SSSFLPPSLD SDTIADTIKS  240
FFPVTSAATV HDGSNKSHHF QDLRLSLQSI QDRTFDHPNP IPHHHFSFDT VPAGFADQNP  300
RMVSWNAVAG GSEGGAGAYT FNMPPVLFGQ GQLPTQRGPL QSSTTSLLRP WMEPIDHQMQ  360
QALIPEVSSI GFSSGGRNFS GFRFPAEIHS DEVLDDGISD KPSSGSSASH Y

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15030.2	2e-56	TCP family protein