PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020674157.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family C3H
Protein Properties Length: 129aa    MW: 14544.4 Da    PI: 8.4889
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020674157.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.71.1e-096182526
                    --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                    +C++f r G CkyGdrCk+ H+
  XP_020674157.1 61 ICHHFVRLGSCKYGDRCKYYHP 82
                    6********************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    
MPLGKYYCDY CDKHFQDTPA ARKRHLSGVQ HQRNRALWFD SVKETQGGIL LHHDGSVALG  60
ICHHFVRLGS CKYGDRCKYY HPTQNETNAN QIITGNVTVG HMGISWGHLP PSLRPPEGGY  120
PSLPFVDWG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.11e-35C3H family protein