PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020674349.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family AP2
Protein Properties Length: 155aa    MW: 17844.1 Da    PI: 10.7986
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020674349.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.21.7e-174099155
             AP2  1 sgykGVrwdkkrgrWvAeIrd.pse.ng...kr.krfslgkfgtaeeAakaaiaarkkleg 55
                    s y+GV+++k +gr++A+I+d     n+   k+ ++++lg ++t+e Aa+ ++ a++k++g
  XP_020674349.1 40 SIYRGVTRHKLTGRYEAHIWDkN-YlNKsqnKKgRQVYLGAYDTEESAARNYDLAALKYWG 99
                    57*******************54.4588977447************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    
MVISSPHSTN TKIFKASGRR RRRKSSGDLP SASRSAKRSS IYRGVTRHKL TGRYEAHIWD  60
KNYLNKSQNK KGRQVYLGAY DTEESAARNY DLAALKYWGI DTTLNFPVAN YDDDYKEMQA  120
MSKEDYLASL RRRSSGFSRG ASKYRGVARH LIFLF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.16e-46AP2 family protein