PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020674374.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

Trihelix

Protein Properties

Length: 295aa MW: 32894.1 Da PI: 9.7205

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020674374.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	53.7	5.4e-17	15	103	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ vl L+e++++++ +r+klk+ +We++++++ + ++p qCk+k+e+++kry+++++ + ++ + s s++++f++++ XP_020674374.1 15 EWSEGGVLSLLEIYESKWLIRNRAKLKGSDWEDIARQVsircSTSNALKTPSQCKNKIESMKKRYRAEAAAAAEN-PSSCSSWQFFTRMD 103 5******************************9999988778888899********************97.778889****97 PP

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence
MDGAFLHASK GKRDEWSEGG VLSLLEIYES KWLIRNRAKL KGSDWEDIAR QVSIRCSTSN 60 ALKTPSQCKN KIESMKKRYR AEAAAAAENP SSCSSWQFFT RMDGLLKGAS HCPSTPKSDN 120 NRKNNFDSGV PAKVEEVDVE VGGGNLHESH REHGSNSSAK GFGGQKMNDE MKESRGSDGD 180 VSTSRLKEVV GDGRISKKRR GLGNEIAESI QFLAHSILKI EQGRMELFKD SEKLRAEAEI 240 KKWEMELKRT EIISKTQLQI AKLAMKRLYG KNNGQDGSPL KTELDMLSRR EVTGD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54390.1	3e-55	Trihelix family protein