PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020674395.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family YABBY
Protein Properties Length: 220aa    MW: 24401.8 Da    PI: 7.3267
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020674395.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY238.11.9e-73171826170
           YABBY   6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeen.lksnvekeesastsvsse 99 
                      se++Cyv+CnfC+t+lavsvP+tslfk+vtvrCGhCt+llsvn++      + + hl++ ++ + +++l    +n     ++ ++   +++ ++
  XP_020674395.1  17 PSEKLCYVHCNFCDTVLAVSVPYTSLFKTVTVRCGHCTNLLSVNMRGLLPPSTNQLHLGHPFQSPNQHNLLEVLSNpPPNLMMDNQVCLSNNFTS 111
                     689********************************************999999999****99988777665555551444555555555666677 PP

           YABBY 100 klsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                      l++ ++ee+p+ p ++rPPekrqrvPsaynrfik+eiqrika+nPd +hreafsaaaknWahfP+ihfgl
  XP_020674395.1 112 PLTKVTEEELPHNPIINRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDTTHREAFSAAAKNWAHFPHIHFGL 182
                     99*******************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    
MSSSSAAFSL DQISPPPSEK LCYVHCNFCD TVLAVSVPYT SLFKTVTVRC GHCTNLLSVN  60
MRGLLPPSTN QLHLGHPFQS PNQHNLLEVL SNPPPNLMMD NQVCLSNNFT SPLTKVTEEE  120
LPHNPIINRP PEKRQRVPSA YNRFIKDEIQ RIKAGNPDTT HREAFSAAAK NWAHFPHIHF  180
GLIPDQTLKK TSVHPPEGED VLLKDGFFAA AAANMEVAPF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.16e-78YABBY family protein