PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020674407.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family bHLH
Protein Properties Length: 152aa    MW: 17380.1 Da    PI: 9.9652
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020674407.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.11.8e-092411254
                    HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                    RRdr+N++f eL ++l +    + +K++K++iL+ A++ +++L
  XP_020674407.1  2 RRDRLNDKFLELGSILEPG---KPPKVDKVSILKDATRMVNQL 41
                    ******************9...99***************9998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    
MRRDRLNDKF LELGSILEPG KPPKVDKVSI LKDATRMVNQ LRGEAQKLKD LNESLQEKIK  60
ELKVEKNELR DEKQRLKAEK ESLEQQIKFL NARPSFIPHA PVIPTAFAAQ GNKPGQKLMM  120
PIISYPGYPM WQFMQPSDVD TSQDAESRPP VA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.13e-75bHLH family protein