PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020674495.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

HD-ZIP

Protein Properties

Length: 291aa MW: 32097.5 Da PI: 7.9727

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020674495.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.1	3.6e-19	119	173	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q +Lee F++n++++ +++ LA+kl+L rqV vWFqNrRa+ k XP_020674495.1 119 RKKLRLSKDQAAILEESFKENNTLNPKQKLALANKLNLRPRQVEVWFQNRRARTK 173 788899***********************************************98 PP
2	HD-ZIP_I/II	124.3	5.8e-40	119	207	1	90
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rlsk+q+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk ++++l+een+rL+kev+eLr + XP_020674495.1 119 RKKLRLSKDQAAILEESFKENNTLNPKQKLALANKLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKLCCENLTEENRRLQKEVQELR-S 207 69*************************************************************************************9.4 PP

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence
MLIDKDQDLG LSLGLSSSEA GCSLQLNLMP SSSPPPTALC LTQSEQRTVL ASQGIDVNRA 60 PMAEIEIEED AGASSPNSTV STENYGGKRR YYAGGGEEID GDRACSRGVS DEEDGDGSRK 120 KLRLSKDQAA ILEESFKENN TLNPKQKLAL ANKLNLRPRQ VEVWFQNRRA RTKLKQTEVD 180 CEFLKLCCEN LTEENRRLQK EVQELRSLKL SPPFFMHMTP PTTLTMCPSC ERIAVSNSTA 240 PPPPPPAKLP RSDMHQLFPR PVRPPVAAIP GWAPIVLRSS FLNATAKPQR S

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	118	124	SRKKLRL
2	168	176	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16780.1	1e-55	HD-ZIP family protein