PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020674549.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family YABBY
Protein Properties Length: 222aa    MW: 24419.9 Da    PI: 6.8983
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020674549.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY243.25.1e-75181846170
           YABBY   6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlk..snvekeesastsvss 98 
                      seq+Cyv+CnfC+t+lavsvP+tslfk+vtvrCGhCt+llsvn++      a + hl++ +  +++++l  e  ++     ++ + + s+++s+
  XP_020674549.1  18 PSEQLCYVHCNFCDTVLAVSVPYTSLFKTVTVRCGHCTNLLSVNMRGLLLPAANQLHLGHPFLAPVQHNLLEEVLSCPppNLMMDQPNLSNNNSM 112
                     68******************************************9999999999999********999998887776422567777778888888 PP

           YABBY  99 eklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                         + ++ee+p+++ v+rPPekrqrvPsaynrfik+eiqrika+nPdi+hreafsaaaknWahfP+ihfgl
  XP_020674549.1 113 PPAAKGTEEELPQTQIVNRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDITHREAFSAAAKNWAHFPHIHFGL 184
                     88899********999******************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    
MSSSSAAAFS LEHLSPPPSE QLCYVHCNFC DTVLAVSVPY TSLFKTVTVR CGHCTNLLSV  60
NMRGLLLPAA NQLHLGHPFL APVQHNLLEE VLSCPPPNLM MDQPNLSNNN SMPPAAKGTE  120
EELPQTQIVN RPPEKRQRVP SAYNRFIKDE IQRIKAGNPD ITHREAFSAA AKNWAHFPHI  180
HFGLIPDQTL KKTSVHPPEG EDVLLKDGFF AAAAANMEVA PF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.17e-81YABBY family protein