PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020674623.2

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C3H

Protein Properties

Length: 347aa MW: 38851.2 Da PI: 9.3539

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020674623.2	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.1	2.7e-07	12	31	8	27
GGGGTS--TTTTT-SS-SSS CS zf-CCCH 8 ffartGtCkyGdrCkFaHgp 27 +f++ G Ck+G+ Ck++H++ XP_020674623.2 12 HFLKKGMCKFGAACKYHHPR 31 89****************96 PP
2	zf-CCCH	37.9	2.9e-12	53	76	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C++++rtGtCk+G CkF+H++ XP_020674623.2 53 KSCSYYMRTGTCKFGVVCKFNHPQ 76 56********************97 PP
3	zf-CCCH	39.5	9.3e-13	194	220	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tG CkyG++CkF+H++ XP_020674623.2 194 PDRPECHYYLKTGNCKYGSTCKFHHPK 220 579**********************96 PP
4	zf-CCCH	34.9	2.6e-11	240	264	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C ++ +G C+yG++CkF+H+ XP_020674623.2 240 DQPVCIYYNLNGACWYGSNCKFNHP 264 6899********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence
MLFDMLLALL QHFLKKGMCK FGAACKYHHP RDRPDAQPVL VNVLGFPIRQ DQKSCSYYMR 60 TGTCKFGVVC KFNHPQPATI WTVLPLNGSP TSGSTIPSMT STARLPFVDG VSSWSLSNRP 120 TYTSSHHLQN LAAYIPVILP PSLGIMPVQQ GWPAYMGFVN HQLSPDVLGP TPIPKSNNIT 180 QSSLSNTPNF PERPDRPECH YYLKTGNCKY GSTCKFHHPK ERSSVSTSTL GPHGLPLRPD 240 QPVCIYYNLN GACWYGSNCK FNHPLFGCYD YNMRATCRPD DFRNQRNTRV AWTPWEAKPT 300 KTMKSEADNR PFSSNNSKED KNIAARTSSP LHVSPSSEST QTNSNFI

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence

MLFDMLLALL QHFLKKGMCK FGAACKYHHP RDRPDAQPVL VNVLGFPIRQ DQKSCSYYMR  60
TGTCKFGVVC KFNHPQPATI WTVLPLNGSP TSGSTIPSMT STARLPFVDG VSSWSLSNRP  120
TYTSSHHLQN LAAYIPVILP PSLGIMPVQQ GWPAYMGFVN HQLSPDVLGP TPIPKSNNIT  180
QSSLSNTPNF PERPDRPECH YYLKTGNCKY GSTCKFHHPK ERSSVSTSTL GPHGLPLRPD  240
QPVCIYYNLN GACWYGSNCK FNHPLFGCYD YNMRATCRPD DFRNQRNTRV AWTPWEAKPT  300
KTMKSEADNR PFSSNNSKED KNIAARTSSP LHVSPSSEST QTNSNFI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	2e-57	C3H family protein