PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020674624.2

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C3H

Protein Properties

Length: 341aa MW: 38101.3 Da PI: 9.5618

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020674624.2	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.1	2.6e-07	8	27	8	27
GGGGTS--TTTTT-SS-SSS CS zf-CCCH 8 ffartGtCkyGdrCkFaHgp 27 +f++ G Ck+G+ Ck++H++ XP_020674624.2 8 HFLKKGMCKFGAACKYHHPR 27 89****************96 PP
2	zf-CCCH	36.7	6.8e-12	48	70	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C++++rtGtCk+G CkF+H++ XP_020674624.2 48 SCSYYMRTGTCKFGVVCKFNHPQ 70 5********************97 PP
3	zf-CCCH	39.5	9.1e-13	188	214	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tG CkyG++CkF+H++ XP_020674624.2 188 PDRPECHYYLKTGNCKYGSTCKFHHPK 214 579**********************96 PP
4	zf-CCCH	34.9	2.6e-11	234	258	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C ++ +G C+yG++CkF+H+ XP_020674624.2 234 DQPVCIYYNLNGACWYGSNCKFNHP 258 6899********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence
MLLALLQHFL KKGMCKFGAA CKYHHPRDRP DAQPVLVNVL GFPIRQKSCS YYMRTGTCKF 60 GVVCKFNHPQ PATIWTVLPL NGSPTSGSTI PSMTSTARLP FVDGVSSWSL SNRPTYTSSH 120 HLQNLAAYIP VILPPSLGIM PVQQGWPAYM GFVNHQLSPD VLGPTPIPKS NNITQSSLSN 180 TPNFPERPDR PECHYYLKTG NCKYGSTCKF HHPKERSSVS TSTLGPHGLP LRPDQPVCIY 240 YNLNGACWYG SNCKFNHPLF GCYDYNMRAT CRPDDFRNQR NTRVAWTPWE AKPTKTMKSE 300 ADNRPFSSNN SKEDKNIAAR TSSPLHVSPS SESTQTNSNF I

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04990.2	2e-55	C3H family protein