PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020674626.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C3H

Protein Properties

Length: 253aa MW: 28030.3 Da PI: 9.2523

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020674626.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.7	1.8e-07	12	31	8	27
GGGGTS--TTTTT-SS-SSS CS zf-CCCH 8 ffartGtCkyGdrCkFaHgp 27 +f++ G Ck+G+ Ck++H++ XP_020674626.1 12 HFLKKGMCKFGAACKYHHPR 31 89****************96 PP
2	zf-CCCH	38.5	1.9e-12	53	76	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C++++rtGtCk+G CkF+H++ XP_020674626.1 53 KSCSYYMRTGTCKFGVVCKFNHPQ 76 56********************97 PP
3	zf-CCCH	40.1	6.1e-13	194	220	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tG CkyG++CkF+H++ XP_020674626.1 194 PDRPECHYYLKTGNCKYGSTCKFHHPK 220 579**********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence
MLFDMLLALL QHFLKKGMCK FGAACKYHHP RDRPDAQPVL VNVLGFPIRQ DQKSCSYYMR 60 TGTCKFGVVC KFNHPQPATI WTVLPLNGSP TSGSTIPSMT STARLPFVDG VSSWSLSNRP 120 TYTSSHHLQN LAAYIPVILP PSLGIMPVQQ GWPAYMGFVN HQLSPDVLGP TPIPKSNNIT 180 QSSLSNTPNF PERPDRPECH YYLKTGNCKY GSTCKFHHPK ERSSVSTSTL GPHGLPLRPD 240 QPVCIYYNLN GAC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18550.1	3e-51	C3H family protein