PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020674653.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family FAR1
Protein Properties Length: 346aa    MW: 39383.6 Da    PI: 5.9694
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020674653.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1751.6e-2366150290
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                      Y +YA+ vGF vrk k+ +   +++i+ ++f Csk g++e+e ++     r++ e+rtgCka++k + +++gkw+v++l++eHnHela
  XP_020674653.1  66 LYYDYAHYVGFCVRKGKNAYFLGTKNIKAKEFLCSKAGFKEDEPEA----TRSKLESRTGCKAMVKFQVDENGKWRVSRLVSEHNHELA 150
                     79****************************************9988....8999*********************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    
MSGSEESGSS PGLENSIVPA TRRSNIDLEK GGETEVVTSG EFLRFDEGKK DLLGEIVDSE  60
KEAYKLYYDY AHYVGFCVRK GKNAYFLGTK NIKAKEFLCS KAGFKEDEPE ATRSKLESRT  120
GCKAMVKFQV DENGKWRVSR LVSEHNHELA KPEERHLLRS AHSVIAAKMS SVFRTLLDVG  180
IKTTKVSAYL FDEGTGIENV KFSKKEGQEL INSRRLTEVE PGDSQSLVNL FKERAAQDTM  240
FFWDIQLDKE GKLTNFFWRD GRSRIDYDCF GDVLIFDMTH RLNKYICSPF LGINNHGQNI  300
MFGAAFLMDE MTDSFVWLFS TFLKSMNDRP PITIFTNQDE AMDKAT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-55FAR1 family protein