PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020675015.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family HSF
Protein Properties Length: 298aa    MW: 32898.5 Da    PI: 7.7094
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020675015.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.91e-35241152102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl k+y++++d++++++isw+++g++fvv+++ efa+++LpkyFkh+nf+SFvRQLn+YgFkk+  ++         weF+++sFk+gkk ll++
  XP_020675015.1  24 FLAKTYQLVDDPTIDDVISWNDDGSTFVVWKPVEFARDLLPKYFKHNNFSSFVRQLNTYGFKKIVPDR---------WEFSNDSFKRGKKWLLCE 109
                     9****************************************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i+r+k 
  XP_020675015.1 110 INRRKM 115
                     ***986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    
MVALPLAIEP PATVEAQRSM PTPFLAKTYQ LVDDPTIDDV ISWNDDGSTF VVWKPVEFAR  60
DLLPKYFKHN NFSSFVRQLN TYGFKKIVPD RWEFSNDSFK RGKKWLLCEI NRRKMATPVV  120
SAVALEAAPV NSALPPAIMP VCKSDSPVNS SEEQVISSSS SPSAPACSST ADLRAENERL  180
RRENAQLSQD LAEIKTVCKN IVRLISKYAT GDVGAGGGGW PPDETLQELD LMSPAKGSLK  240
PETTEKCTKI FGVAMGSKRI RDDDGCEQWP KMAAIAGKPE TFDRKGEGWH VTRCRMAT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.14e-63HSF family protein