PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020675045.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

AP2

Protein Properties

Length: 431aa MW: 47967.9 Da PI: 6.8306

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020675045.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	50.1	6.6e-16	198	257	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a++k++g XP_020675045.1 198 SKYRGVTRHRWTGRYEAHLWDnSCRkEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 257 89*****************655454478446***********************98 PP
2	AP2	47.8	3.6e-15	300	351	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g XP_020675045.1 300 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 351 57**************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence
MEDKSWLGFS LSSSNFSNDQ HSHEGGGGGG GGGREAPSSH GHLYALPLLS DGSVCTLLEQ 60 DWRCRSHSDQ RMVGPKLENF LGGYSESSIN EDSQNTVETI FYPHHQFQSF DQAQNIKAEF 120 LISSSNSIDP IYNTGLDGST SISELKSWLR QNPPPPPPET QVALSIHHDN NFEDGQHGTV 180 VLKSVARKSI DNVGQRTSKY RGVTRHRWTG RYEAHLWDNS CRKEGQTRKG RQVYLGGYDK 240 EEKAARAYDL AALKYWGPTT QINFPLSAYE RELEDMKNMT RQEFVAHLRR TSSGFSRGAS 300 IYRGVTRHHQ HGRWQARIGR VAGNKDLYLG TFSTQEEAAE AYDIAAIKFR GTGAVTNFDI 360 SRYDVNRICS SSSLFCGNLL RRSGADTMEA MATICSSSEC EQIPETPGGS DDNRSEFSVF 420 PQSLFGVPVI L

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence

MEDKSWLGFS LSSSNFSNDQ HSHEGGGGGG GGGREAPSSH GHLYALPLLS DGSVCTLLEQ  60
DWRCRSHSDQ RMVGPKLENF LGGYSESSIN EDSQNTVETI FYPHHQFQSF DQAQNIKAEF  120
LISSSNSIDP IYNTGLDGST SISELKSWLR QNPPPPPPET QVALSIHHDN NFEDGQHGTV  180
VLKSVARKSI DNVGQRTSKY RGVTRHRWTG RYEAHLWDNS CRKEGQTRKG RQVYLGGYDK  240
EEKAARAYDL AALKYWGPTT QINFPLSAYE RELEDMKNMT RQEFVAHLRR TSSGFSRGAS  300
IYRGVTRHHQ HGRWQARIGR VAGNKDLYLG TFSTQEEAAE AYDIAAIKFR GTGAVTNFDI  360
SRYDVNRICS SSSLFCGNLL RRSGADTMEA MATICSSSEC EQIPETPGGS DDNRSEFSVF  420
PQSLFGVPVI L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37750.1	1e-119	AP2 family protein