PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020675063.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family FAR1
Protein Properties Length: 237aa    MW: 27277.5 Da    PI: 6.4383
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020675063.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR163.46.2e-2042124890
            FAR1   8 kevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     ++ GFs++++ +++   ++++i++++fvCsk g++++++ + +++r tr++ rtgC a+++   +++g w+v+++ + HnHela
  XP_020675063.1  42 NSSGFSISRKDHHSFwPNSRKIKSKDFVCSKAGFKKSNDLN-SRKRFTRSNVRTGCPAMVRFVIDENGYWHVKRFIESHNHELA 124
                     578****99988887788999******************99.99**************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    
MDCSVKREVE EGMEEGVHES ERMHESEGLV HELESEPNLS GNSSGFSISR KDHHSFWPNS  60
RKIKSKDFVC SKAGFKKSND LNSRKRFTRS NVRTGCPAMV RFVIDENGYW HVKRFIESHN  120
HELASPADRH LLRSCRNVVE EKASVLKSMT DAGIRTVDAY AYLVEEVGGC ENVEFSKRDA  180
YNFIQKEKRA RIEIGDTNSL IQLFKDRQVE DHMFVWDAQY DDHDRLLIFS GLMAEAG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-19FAR1 family protein