PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020675083.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 292aa MW: 32526.7 Da PI: 6.6402

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020675083.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.4	3.4e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +++++G g+W++ ++ g++R++k+c++rw +yl XP_020675083.1 14 KGPWTPEEDHKLVLYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	55.3	1.5e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE++ +++++ lG++ W++Ia +++ gRt++++k++w+++l XP_020675083.1 67 RGKFSPEEEQSILNLHSILGNK-WSAIATHLP-GRTDNEIKNFWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence
MGRSPCCDEN GLKKGPWTPE EDHKLVLYIQ KHGHGSWRAL PKLAGLNRCG KSCRLRWTNY 60 LRPDIKRGKF SPEEEQSILN LHSILGNKWS AIATHLPGRT DNEIKNFWNT HLKKKLIQMG 120 FDPMTHRPRT DFFAALPHLL ALANLVDHRP STWLVDGLSA EAAKLQCLQY ILHSATPPSA 180 DNSINNLLNS TDHQSFPSSF DSMNNNQPLF NTHSTEIDQV PLSYEQPLMS NENSSFSLFT 240 QGEISTPVSV LPPLTDMSNP GDACSTSSCG GSAAASFWPD LLLDDPFMAE FV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34670.1	7e-92	MYB family protein