PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020675326.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

bHLH

Protein Properties

Length: 462aa MW: 51218 Da PI: 4.9556

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020675326.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.9	3.2e-12	285	331	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N+ f Lr ++P+ K++Ka+ L Av YI +Lq XP_020675326.1 285 NHVEAERQRREKLNQLFYSLRAVVPNV-----SKMDKASLLGDAVVYITELQ 331 799*********************6.....5***************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 462 aa Download sequence
MIVLPEDMAS SILIDDPFNP YTFPCPLPSA TVSSCDSTIT SSSPPDALQL RLQALIESHS 60 DSWTYAIFWH SSSNAMLSWG DGFYKGSLDP PINHRHRPYS PEQEHRKRVL RELNSLISTS 120 VDDAIEEEVT DTEWFFLISM THCLVGPTSL LIQAQMSAET IWISGNNRLG AAQCDRARQA 180 AAFGIRTMAC IPVANGVVEL GSTNVVFKNP DTISRIRDSF SFPSVEIPIS NPQFLVDNPI 240 SCGAVTPLLT TAGSENSDLA LTVEPERRPR KRGRKTANER DQPLNHVEAE RQRREKLNQL 300 FYSLRAVVPN VSKMDKASLL GDAVVYITEL QETIRSLDSC NESLRSQVDV LKSNVNGFLA 360 EVGGREGKLE GLELEVKVIR TEAMIRLQSK RKGHPSAKFM SALEAVGLEV LYGSCSVVED 420 LMLQQFTVRM TDFRSQEQLN EEIFARLLGD AAAGGDCFQQ FS

Sequence ? help Back to Top

Protein Sequence Length: 462 aa Download sequence

MIVLPEDMAS SILIDDPFNP YTFPCPLPSA TVSSCDSTIT SSSPPDALQL RLQALIESHS  60
DSWTYAIFWH SSSNAMLSWG DGFYKGSLDP PINHRHRPYS PEQEHRKRVL RELNSLISTS  120
VDDAIEEEVT DTEWFFLISM THCLVGPTSL LIQAQMSAET IWISGNNRLG AAQCDRARQA  180
AAFGIRTMAC IPVANGVVEL GSTNVVFKNP DTISRIRDSF SFPSVEIPIS NPQFLVDNPI  240
SCGAVTPLLT TAGSENSDLA LTVEPERRPR KRGRKTANER DQPLNHVEAE RQRREKLNQL  300
FYSLRAVVPN VSKMDKASLL GDAVVYITEL QETIRSLDSC NESLRSQVDV LKSNVNGFLA  360
EVGGREGKLE GLELEVKVIR TEAMIRLQSK RKGHPSAKFM SALEAVGLEV LYGSCSVVED  420
LMLQQFTVRM TDFRSQEQLN EEIFARLLGD AAAGGDCFQQ FS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	267	275	RRPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17880.1	4e-49	bHLH family protein