PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020675346.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family Trihelix
Protein Properties Length: 184aa    MW: 20763 Da    PI: 4.4592
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020675346.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix63.26e-2011702384
        trihelix 23 rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84
                    ++++++p+W++vs ++r++g++r+++qC+++w+nl+++ykkike+e++r+ + +     f  
  XP_020675346.1 11 SAAAAEPKWAAVSTYCRRHGVNRGAVQCRKRWSNLAGDYKKIKEWEIRREMRGE--PESFWA 70
                    456899*****************************************9953322..333333 PP
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    
MFSWLGRAST SAAAAEPKWA AVSTYCRRHG VNRGAVQCRK RWSNLAGDYK KIKEWEIRRE  60
MRGEPESFWA MRNDLRRERK LPGFFDREVY DILDGVSPAA ASSAARAAPA VEEEGDVEEV  120
VFDSGRSAAD DGLFSDFEEE KEAEEGDESE MERPTPPVEV VPISEKKLEL VQEEESTPGY  180
ALFH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.19e-44Trihelix family protein