PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020675387.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

Trihelix

Protein Properties

Length: 223aa MW: 24967.8 Da PI: 4.7677

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020675387.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	86.2	3.9e-27	23	109	1	84
trihelix 1 rWtkqevlaLiearremeerlr.....rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 rWt+qe+l+Li+++r +e+r r ++++++p+W++vs ++r++g++r+++qC+++w+nl+++ykkike+e++r+ + + f XP_020675387.1 23 RWTRQEILVLIQGKRVVESRGRgrastSAAAAEPKWAAVSTYCRRHGVNRGAVQCRKRWSNLAGDYKKIKEWEIRREMRGE--PESFWA 109 8*****************995433224699****************************************9953322..333333 PP

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence
MEIAALTSAA NGGEACRPPR LPRWTRQEIL VLIQGKRVVE SRGRGRASTS AAAAEPKWAA 60 VSTYCRRHGV NRGAVQCRKR WSNLAGDYKK IKEWEIRREM RGEPESFWAM RNDLRRERKL 120 PGFFDREVYD ILDGVSPAAA SSAARAAPAV EEEGDVEEVV FDSGRSAADD GLFSDFEEEK 180 EAEEGDESEM ERPTPPVEVV PISEKKLELV QEEESTPGYA LFH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	2e-55	Trihelix family protein