PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020675616.2
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family M-type_MADS
Protein Properties Length: 177aa    MW: 20205.9 Da    PI: 4.5969
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020675616.2genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF75.44.4e-242066147
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                    krie++ +rqv fskRr+g++KKA+ELS+LC++evav++fs+ gk y
  XP_020675616.2 20 KRIEEEQKRQVCFSKRRQGLFKKASELSTLCGVEVAVVVFSPAGKPY 66
                    79******************************************976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    
MDSAEINKKK GKGRRKIEIK RIEEEQKRQV CFSKRRQGLF KKASELSTLC GVEVAVVVFS  60
PAGKPYFFGQ PSVDHVLNHF LNVVPNPSNQ DQPTGESFWW DIDLHSMGVD ELKQYEEILA  120
KQQSVVTEAA QQCYLQAPEG AAMEQIEALP YAYPEVGEDD YFLCWQQDYD CLDIVPI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.13e-21M-type_MADS family protein