PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020675633.2
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family C3H
Protein Properties Length: 552aa    MW: 58953.2 Da    PI: 6.7271
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020675633.2genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.53e-10153177226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     +++ C +++ t tCk+G+ CkF H+
  XP_020675633.2 153 GEKDCVHYMLTRTCKFGEACKFDHP 177
                     7889********************9 PP
2zf-CCCH361.2e-11207232227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     +++ C++f++t tCkyG +CkF+H++
  XP_020675633.2 207 GEPDCPYFLKTQTCKYGLKCKFNHPK 232
                     5799********************96 PP
3zf-CCCH39.68.5e-13260283427
                     ---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                       C+f+a+tGtCk+G++CkF+H++
  XP_020675633.2 260 TVCSFYAKTGTCKFGANCKFHHPK 283
                     68********************96 PP
4zf-CCCH375.7e-12339363226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     +++ C+f+++tG CkyG++C+++H+
  XP_020675633.2 339 GESDCPFYLKTGSCKYGATCRYSHP 363
                     7889********************9 PP
5zf-CCCH41.52.2e-13419444126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +++++C++++rtG+Ck+G+rCkF+H+
  XP_020675633.2 419 PGEAECDYYMRTGHCKFGERCKFHHP 444
                     5789*********************9 PP
6zf-CCCH41.81.8e-13476499427
                     ---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                     + C+f+++tGtCkyG+ C+F H+p
  XP_020675633.2 476 VACPFYMKTGTCKYGAACRFDHPP 499
                     68********************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    
MAKQIYYSTS FPGGVGGGYS LHGTEPYLPV AIGSSFYSTD GTSITGEQAS YIYATQSNGL  60
RAPGTEIPGV AIYSAGNIGA GLNAVSLRGA DGLGVTTTVN AGSKRSAEAL YNQSIMANGT  120
IAPSDALLSA YSLAKRPKLV SASHLPMYPQ RPGEKDCVHY MLTRTCKFGE ACKFDHPVWV  180
PEGGIPDWKE SQVPLISTTE SFPERTGEPD CPYFLKTQTC KYGLKCKFNH PKVKSSTSVT  240
VAESEAIPIS SILPERPSET VCSFYAKTGT CKFGANCKFH HPKDIQIQSA GKYTGYVEKK  300
ESTANNAAAA TVDIKHTKAF VPFSPATLSN SKGLPIRPGE SDCPFYLKTG SCKYGATCRY  360
SHPDRIFINP TQTANLSNAF ITPAIASLPI GVINPAASFV PSIDPRFAQL GVTVYPQKPG  420
EAECDYYMRT GHCKFGERCK FHHPLDRSAS TVASAKPTQE SVKLTLAGLP RREGSVACPF  480
YMKTGTCKYG AACRFDHPPP GEAIAMAQLS HGIAEADNSS SGDEVESDEE VESANEVESG  540
GEEEGDDTET SQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-164C3H family protein