PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020675648.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family HD-ZIP
Protein Properties Length: 807aa    MW: 87290.5 Da    PI: 5.6667
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020675648.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox68.77.3e-22115170156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t++q++eLe+lF+++++p++++r eL+k+lgL++rqVk+WFqNrR+++k
  XP_020675648.1 115 KKRYHRHTPNQIQELEALFKECPHPDEKQRLELSKRLGLETRQVKFWFQNRRTQMK 170
                     688999***********************************************999 PP
2START169.91.7e-533245501206
                     HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                     ela++a++el+k+a+ +ep+W        e +n++ +   f++  +       +ea r++++v+ ++  lve+l+d   +W e+++    +  t+
  XP_020675648.1 324 ELALSAMDELLKMAEMGEPLWIPAQengkEALNYEHYEHLFPRCIGmkevgLVSEATRETAMVIINSLVLVETLMDAV-RWAEMFPgmiaRTITT 417
                     57899*****************999777777777777777777666********************************.*******999999999 PP

                     EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--...-TTSEE-EESSEEEEEEEECTCEEEEEEEE CS
           START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe..sssvvRaellpSgiliepksnghskvtwve 168
                     + is+g      galqlm ae q+lsplvp R++ f+R+++ql +g w++vdvS+d  ++  +  +  ++++++lpSg+++++++ng+ kvtwve
  XP_020675648.1 418 DIISTGvggsrnGALQLMHAEQQVLSPLVPiREVNFLRFCKQLADGAWAVVDVSIDDLRDTHSsaTGISAKCRRLPSGCVVQDMPNGYLKVTWVE 512
                     999999***************************************************9999886566678************************* PP

                     -EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 169 hvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     h+++++   h+l+r+l++sg+a ga++wvatlqrqce+
  XP_020675648.1 513 HAEYDETAAHQLYRPLLRSGMALGAQRWVATLQRQCEC 550
                     ************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 807 aa     Download sequence    
MSFGGLFDGD SGGGRLVSDL PYGSSAMVSQ PRLVSNSGVP KPMFGSTGLS LGLQSNLEGQ  60
GDFSRLASVS GGGVGSVGEL DVLCRNKEDE NESRSGSDNL EGGSGDDMDE NPRKKKRYHR  120
HTPNQIQELE ALFKECPHPD EKQRLELSKR LGLETRQVKF WFQNRRTQMK TQMERHENTI  180
LRQENDKLRA ESITIRDAIR NPICGTCGGP AVLGEVSLEE QHLRIENARL KDELDRVCTL  240
AGKFIGRPIS SLVNSISTPV PNSSLELAVG GNGYGAFGSV PPTFSSVSDF VAGASSPLGT  300
VITPPARTSI PSVDRSMERS MFLELALSAM DELLKMAEMG EPLWIPAQEN GKEALNYEHY  360
EHLFPRCIGM KEVGLVSEAT RETAMVIINS LVLVETLMDA VRWAEMFPGM IARTITTDII  420
STGVGGSRNG ALQLMHAEQQ VLSPLVPIRE VNFLRFCKQL ADGAWAVVDV SIDDLRDTHS  480
SATGISAKCR RLPSGCVVQD MPNGYLKVTW VEHAEYDETA AHQLYRPLLR SGMALGAQRW  540
VATLQRQCEC LAILMSSSVP NRDHAGIMPA GRRSMLKLAQ RMTDNFCAGV CASSARKWSH  600
LANMGSIGED VRMMTRQSME DPGEPPGVVL SAATSVWLPV SPHRLFDFLR NETLRSQWDI  660
LSNGGPMQEM AHIAKGQDEG NAVSLLRASA VSANQSSMLI LQETCTDASG SMVVYAPVDV  720
PAMHLVMNGG DSAYVALLPS GFAVMPDGPV AAGGEGKIGG GSLLTVAFQI LVNSLPMAKL  780
TVESVETVNN LISCTVQKIK AALQCEN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein