PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020675668.2
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family FAR1
Protein Properties Length: 287aa    MW: 33332 Da    PI: 8.8044
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020675668.2genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR173.93.5e-2368157290
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     ++++YA++ GFsvrk++++   ++++i+ ++fvCsk g++++++++  + +r tr++ rtgC a+++   ++dg w+v+++ + HnHela
  XP_020675668.2  68 CFCTYAHDNGFSVRKNHHSFWPNSRKIKLKDFVCSKAGFKKSDDHNsGKGKRFTRPVVRTGCPAMVRFVTDEDGYWHVKRFIESHNHELA 157
                     799**************************************999993455666***********************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    
MAAIRGSYKK PPWPAGREET GGGRRFKPAS GLHPRTEARK EIRPFSFMFA LYLRFQAVYK  60
DEIEAYECFC TYAHDNGFSV RKNHHSFWPN SRKIKLKDFV CSKAGFKKSD DHNSGKGKRF  120
TRPVVRTGCP AMVRFVTDED GYWHVKRFIE SHNHELASPA DRHLLRSCRN IIEEKASVLK  180
LMTDVGIKTV DAYAYLAEEV GGCENIGFSK RDAYNFIQKE KRARIEIGDT NPLIQLFKDR  240
QVEDHMFAWD VQYEDQDRLL NFFWVDGRSM IDYECFGDVL IFILVTG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-26FAR1 family protein