PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020675682.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

bHLH

Protein Properties

Length: 243aa MW: 27329.8 Da PI: 4.7747

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020675682.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	21.9	3.2e-07	94	138	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h +rEr RR+r+ ++++ L ++lP +K +iLe +v +++L XP_020675682.1 94 HMMRERLRRERLSQSYQDLHSMLPLG-----TKACRNSILESTVMMVREL 138 889*********************96.....4666666888888888777 PP

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence
MDPSSSTSPI FSAEEELSFN GELPLSVFSP DPLFDPLTSA SLSLSDSSSS ALSNYTKPPL 60 KLNSVLQDDD NGGGNIHRSK RELNGEKNGR DFQHMMRERL RRERLSQSYQ DLHSMLPLGT 120 KACRNSILES TVMMVRELKI VEEEMQQRNK ELLSMLKSKP ATERSSEPSD EVEIKIKMPN 180 TTSTVDSVIN ALHCLKGMDV KIRAIRSELS SEGDQELIMT IQSQMCESDE ELETQAMTRR 240 FLP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	99	104	RLRRER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43650.1	7e-13	bHLH family protein