PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020675760.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

GRF

Protein Properties

Length: 257aa MW: 28689.9 Da PI: 8.683

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020675760.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	68.6	8e-22	90	133	2	45
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 epgrCrRtDGKkWRCsr + +++k+CErHlhrg++r rk+k++ XP_020675760.1 90 LEPGRCRRTDGKKWRCSRVACPDSKYCERHLHRGKNRLRKHKDA 133 69***************************************997 PP
2	QLQ	43.6	9e-16	22	56	2	36
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 +FT++Q+q+L+ Q+ + ++a ++P+P +Ll+ ++ XP_020675760.1 22 PFTPSQWQELEEQAIMFNCMAVGLPIPTHLLLSLR 56 9******************************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence
MMMMMEVGRG NGNVITGKSF CPFTPSQWQE LEEQAIMFNC MAVGLPIPTH LLLSLRRSRY 60 SQPKPGFFPP YSPLGWGCFQ LGSSGRAEDL EPGRCRRTDG KKWRCSRVAC PDSKYCERHL 120 HRGKNRLRKH KDASLQHESS AASVLPCSPL SLLPPISKSK DTACKEPRYF HGTSGLIFHH 180 CSVLGSDLRL ERPVESEKGG NHKPISLHCF FDERPEKIAE DDGARSSQCK SLKRAEDLTS 240 SGSVIPEPLP VLLDLNV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	1e-35	GRF family protein