PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020675853.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family bHLH
Protein Properties Length: 249aa    MW: 26969.7 Da    PI: 7.8484
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020675853.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.55.1e-1365111354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++h+e+ErrRR+riN  + +Lr++ P        Kl+Ka  L +++++Ik+L
  XP_020675853.1  65 KSHSEAERRRRERINGHLMTLRRMTPCT-----DKLDKAGLLAEVINHIKNL 111
                     58*************************7.....6****************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    
MDSVPLGDFR AFGRFLDGGM FGVGSSSVAS LILDGESGEL VRAPVKLGKK GGAGAADLRS  60
AMALKSHSEA ERRRRERING HLMTLRRMTP CTDKLDKAGL LAEVINHIKN LKSDAIEISK  120
FCTIPSDTDE LRVEVDGEGA NNSSFSVKAS FCCDDRPELL ADLKHTLESL QLKTISAEIS  180
SLGGRVKFVF VMTGEGVNND LERHLFTTSI HQALKSVLDR ASCTDFLPNA CFSGKRRRIS  240
PFESSSSSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17176ERRRRE
2235239KRRRI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.19e-36bHLH family protein