PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020675859.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 164aa MW: 19034.7 Da PI: 10.6152

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020675859.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.1	4.9e-14	3	48	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+WT+eEd+ l d+vk G+++W++I + + Rt+k+c++rw + XP_020675859.1 3 KGPWTAEEDKVLMDYVKNNGPRDWSSIQSNGLLPRTGKSCRLRWVN 48 79***********************9976667********87 PP
2	Myb_DNA-binding	38.9	2e-12	59	99	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++T eE+ +d +++G++ W++Ia + gRt++++k++w XP_020675859.1 59 KFTLEEERAVIDMQARFGNK-WARIATFLE-GRTDNDVKNFWS 99 79****************.*****.*********5 PP

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence
MKKGPWTAEE DKVLMDYVKN NGPRDWSSIQ SNGLLPRTGK SCRLRWVNKL RPNLKSGCKF 60 TLEEERAVID MQARFGNKWA RIATFLEGRT DNDVKNFWST RQKRLARLLQ TPLPVRSQRR 120 QKSSPVSSQV SDSEDVLLQN LNSPSIQFIK FTENYVNGKE LDYI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60460.1	3e-61	MYB family protein