PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020675899.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family C2H2
Protein Properties Length: 158aa    MW: 16910.6 Da    PI: 7.1248
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020675899.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.000323557123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C++C + F ++  L  H++ H
  XP_020675899.1 35 YECQYCFREFINSQALGGHQNAH 57
                    99******************988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    
MASTNLKLFG FNLTNEEPSS STITATSSTT DQKKYECQYC FREFINSQAL GGHQNAHKKE  60
RQEHKRSLAA AALANYNNTI LSAFFSSSQF SPPDHVPFNV SYGSGARAAP YRNDIVVAFG  120
ADGYSGHVAG GRKDNFSGPD EVCGVDLHLS LAPAGSPA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06650.12e-12C2H2 family protein