PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020676064.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C2H2

Protein Properties

Length: 125aa MW: 13780.8 Da PI: 6.7819

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020676064.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.8	0.0015	14	36	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F++ L H +H XP_020676064.1 14 FECKTCNRQFPTFQALGGHSASH 36 89*********988887776665 PP
2	zf-C2H2	12.5	0.00045	56	78	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp Cg F L H+r+H XP_020676064.1 56 HECPVCGLEFAVGQALGGHMRRH 78 79********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 125 aa Download sequence
MSLEHDAAAS MKVFECKTCN RQFPTFQALG GHSASHRKTK PTAGEAEGKL GKARVHECPV 60 CGLEFAVGQA LGGHMRRHRP MAMKTEEKGM MWLDLNLAPM DDDTEVFRLG ETNPTMESFE 120 LGMAL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28710.1	6e-31	C2H2 family protein