PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020676158.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family B3
Protein Properties Length: 262aa    MW: 30144.5 Da    PI: 10.1798
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020676158.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.56.5e-1522111198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     ffkv++p + +    l +p kfa++ + +  +++  t++d+ grsW  ++  ++k++   + ++GW +Fvk  ++  g f+vFk++g+++f  +v
  XP_020676158.1  22 FFKVMLPGYLN---ELPIPPKFARNLSVQ--NHRAATIRDPLGRSWPANV--EGKGEDlWFCGEGWMNFVKGLDIGIGYFLVFKYKGNMKF--YV 107
                     67777554444...478******877655..44579999***********..88888877889************************9**9..** PP

                     EEE- CS
              B3  95 kvfr 98 
                     kvf+
  XP_020676158.1 108 KVFD 111
                     *998 PP
2B340.16.5e-131772571696
                     EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                     l +p  f++++  ++ +  +++l d++grs  v++++rk++    + ++ GW eF+  n+L +gD ++F+ ++++   + v+v
  XP_020676158.1 177 LNVPLGFLASYRFEN-K-SKVILVDPKGRSSPVRITIRKRRPIiqCCFGMGWHEFCLRNHLSAGDKCIFEIKSEEADAYIVHV 257
                     778999999995442.3.38***************66555544789999*********************8876666566655 PP
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    
MLLLTTQMAK VAMKKKKVAT RFFKVMLPGY LNELPIPPKF ARNLSVQNHR AATIRDPLGR  60
SWPANVEGKG EDLWFCGEGW MNFVKGLDIG IGYFLVFKYK GNMKFYVKVF DLTACEVEYS  120
HEICYSKRFE LSSTLNKQGE AKASKTAEKL IKQFCKSLGP HFSITLKFCN LRSRPYLNVP  180
LGFLASYRFE NKSKVILVDP KGRSSPVRIT IRKRRPIIQC CFGMGWHEFC LRNHLSAGDK  240
CIFEIKSEEA DAYIVHVHII RE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.16e-22B3 family protein