PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020676293.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C2H2

Protein Properties

Length: 236aa MW: 26143.3 Da PI: 9.9696

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020676293.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.4	0.00023	52	71	2	21
EETTTTEEESSHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHir 21 +C Cg++F ++ L H+r XP_020676293.1 52 ECYVCGRRFGTWKALFGHMR 71 599****************8 PP
2	zf-C2H2	11.7	0.00078	112	134	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C C ++F++k L H +H XP_020676293.1 112 YACRECARVFKTKQALGGHRASH 134 89**************9999888 PP
3	zf-C2H2	12.7	0.00037	173	193	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C Cg+ F + + ++ H+r+H XP_020676293.1 173 CRVCGRQFFTYHGMRIHQRVH 193 *******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence
MNPFSDSPGP SRQPFSPSSS ESSSSSSSLE GRRYAVAASV EEEDKSMSVQ PECYVCGRRF 60 GTWKALFGHM RCHPDREWRG VRPLAEGEEA CRGRKRWRRR RRQEEATAAG GYACRECARV 120 FKTKQALGGH RASHRGVIGC NTKAKETTVR VGPAAADVRG ERGLGGDGKT VACRVCGRQF 180 FTYHGMRIHQ RVHRERPGGE VVARKTEEKG FIVDLNLPPP PEVAEEEDKQ AGNKQG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	92	102	RGRKRWRRRRR
2	98	124	RRRRRQEEATAAGGYACRECARVFKTK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35280.1	2e-21	C2H2 family protein