PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020676328.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 317aa MW: 35619.2 Da PI: 7.7339

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020676328.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.3	5.6e-16	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+ ++++G+g +W + ++++g++R++k+c++rw++yl XP_020676328.1 14 KGPWSPEEDAKLKSFIEEHGTGgNWIALPHKIGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	40.3	7.1e-13	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd+++ +++ G++ W+ Ia+ ++ gRt++++k++w++ XP_020676328.1 69 GGFSEEEDQIICNLFVSIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 569****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence
MGRAPCCDKA NVKKGPWSPE EDAKLKSFIE EHGTGGNWIA LPHKIGLKRC GKSCRLRWLN 60 YLRPNIKHGG FSEEEDQIIC NLFVSIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGR 120 RRDSSSTSQP RHLPNEKGCN PNPNPNIGSS LTLTSSALER LQLHMQLQGL NSPFSFYNNT 180 ALWPKFYPLG NDCKLFQTIS TDAITTTVYP LKLSQATMEP SEQANFSNSM ITSLQGSLGI 240 SSSSSSNLDI ELHDLLCGKE SQFFNEMESF KEMNIEEGMG WWGSNGLDEK SLFTSLDSTS 300 ALRSDFVLQE YRMGYDL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	1e-88	MYB family protein