PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020676329.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family CO-like
Protein Properties Length: 325aa    MW: 34518 Da    PI: 6.4136
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020676329.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.83.9e-071860438
        zf-B_box  4 rkCpeHeeke..lqlfCedCqqllCedClleeHkg.......Ht 38
                    r+C+ ++  +  + lfC+ +  +lC++C    H g       H+
  XP_020676329.1 18 RTCDGCKGPPapAVLFCRADAAFLCRTCDARVH-GanklasrHE 60
                    79*****64444*****************9999.4466666676 PP
2zf-B_box24.94.1e-0862106341
        zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 
                      + C+ +e+ ++   C+ +   lC  C   +H+       H +vp
  XP_020676329.1  62 VWLCEVCEQAPAAVTCKADAAALCSACDADIHSAnplasrHHRVP 106
                     689*****************************6689999977766 PP
3CCT68.71.5e-23249292144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Rea+++RY+eKrk+R+FeK+irY+sRKa+Ae RpR+KGrF+k++
  XP_020676329.1 249 REARVMRYREKRKNRRFEKTIRYASRKAYAEARPRIKGRFAKRT 292
                     9*****************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    
MGGKGAEGGG TYWGLGARTC DGCKGPPAPA VLFCRADAAF LCRTCDARVH GANKLASRHE  60
RVWLCEVCEQ APAAVTCKAD AAALCSACDA DIHSANPLAS RHHRVPVVPL FESPVHDPAL  120
LFDTDDGEED VPVAATWILP APAKDPMMMK SNDCFSDVDP YLDLEYASSV EAGIYHSDSV  180
VPAGGGASPG FIMLDFAKSK PTHSYTISHS MSSSEVAVVP DGGGSAMADT STCAGGGVGG  240
GERPAIMDRE ARVMRYREKR KNRRFEKTIR YASRKAYAEA RPRIKGRFAK RTEVESEIDQ  300
IYSSAAAATA AFMEAVQGYG VVPSF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1210GGKGAEGGG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.15e-73CO-like family protein