PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020676487.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

AP2

Protein Properties

Length: 484aa MW: 52460 Da PI: 7.3209

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020676487.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.5	6.1e-17	134	183	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g XP_020676487.1 134 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 183 78*****************......55**********************997 PP
2	AP2	43.9	5.9e-14	226	276	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+t+ eAa+a+++a+ k++g XP_020676487.1 226 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEVEAARAYDKAAIKFNG 276 89******.7**5553..2.26******99*********9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence
MWDLNGSPDN MVGSEGDEGE SSSQRKGKEP ESAVSTENSS SSAVVVEASD EGEDNSGDRE 60 VGKIFGISVT GGQQPFVTRQ FFPSGEAVAQ NCGDPPPRAH WAAVQFRPPE SAAAAAPSGQ 120 PMKKSRRGPR SRSSQYRGVT FYRRTGRWES HIWDCGKQVY LGGFDTAHAA ARAYDRAAIK 180 FRGVDADINF HLDDYEDDLK QMGNLTKEEF VHVLRRQSTG FPRGSSKYRG VTLHKCGRWE 240 ARMGQFLGKK YVYLGLFDTE VEAARAYDKA AIKFNGKDAV TNFDASIYAD ELAVQAEHNL 300 DLSLGSSAPK ISTANPMDEE SSGCASSSGG ADQRFLTTCR DVINTNTKLK LPENESRVNF 360 HLGHHMEMLK HSSYIQAPQF ALPPPQSVGF QFIRHQLSHP SSFHQYHPGG NLAAARSSGD 420 VHLSLAIDGG SSGSNWAPLP AVVGPQFSSP TAVVAAASSG FPPQAVKSSH NWLHKNGLQS 480 LGRP

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence

MWDLNGSPDN MVGSEGDEGE SSSQRKGKEP ESAVSTENSS SSAVVVEASD EGEDNSGDRE  60
VGKIFGISVT GGQQPFVTRQ FFPSGEAVAQ NCGDPPPRAH WAAVQFRPPE SAAAAAPSGQ  120
PMKKSRRGPR SRSSQYRGVT FYRRTGRWES HIWDCGKQVY LGGFDTAHAA ARAYDRAAIK  180
FRGVDADINF HLDDYEDDLK QMGNLTKEEF VHVLRRQSTG FPRGSSKYRG VTLHKCGRWE  240
ARMGQFLGKK YVYLGLFDTE VEAARAYDKA AIKFNGKDAV TNFDASIYAD ELAVQAEHNL  300
DLSLGSSAPK ISTANPMDEE SSGCASSSGG ADQRFLTTCR DVINTNTKLK LPENESRVNF  360
HLGHHMEMLK HSSYIQAPQF ALPPPQSVGF QFIRHQLSHP SSFHQYHPGG NLAAARSSGD  420
VHLSLAIDGG SSGSNWAPLP AVVGPQFSSP TAVVAAASSG FPPQAVKSSH NWLHKNGLQS  480
LGRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36920.1	1e-109	AP2 family protein