PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020676503.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family MIKC_MADS
Protein Properties Length: 239aa    MW: 27416.2 Da    PI: 10.1012
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020676503.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.33e-31958150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krienk+nrqvtfskRrngi+KKA+ELSvLCdae+a+iifss+gkl+e+ 
  XP_020676503.1  9 KRIENKINRQVTFSKRRNGIMKKAYELSVLCDAEIALIIFSSRGKLFEFG 58
                    79**********************************************95 PP
2K-box100.32.7e-3381170998
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                      +++++ +++qel+kLk+++e+Lqr+qRhllGedL+ LslkeLqqLe+qLe+sl++ R+k+++++l+q+eel+kke+ l ++nk+L++kl
  XP_020676503.1  81 PNDHETLNWYQELSKLKAKYESLQRSQRHLLGEDLDMLSLKELQQLERQLESSLSHARQKRTQIMLNQMEELKKKERHLGDINKQLKHKL 170
                     4677889*********************************************************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    
MGRGRVELKR IENKINRQVT FSKRRNGIMK KAYELSVLCD AEIALIIFSS RGKLFEFGSP  60
DITKTLERYQ RCTFTPQTIH PNDHETLNWY QELSKLKAKY ESLQRSQRHL LGEDLDMLSL  120
KELQQLERQL ESSLSHARQK RTQIMLNQME ELKKKERHLG DINKQLKHKL GADGGSMRPL  180
QGSWRSDAGA SIDAFPNHSS NMDTEPTLQI GRYHQYVPSE ATIPRSSGAG NGFMSGWAV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.16e-81MIKC_MADS family protein