PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020676694.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family bHLH
Protein Properties Length: 272aa    MW: 29292.6 Da    PI: 5.4483
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020676694.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.63.4e-11151198455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L++l+P +    +k   Ka++L + ++YI+ Lq
  XP_020676694.1 151 SHSLAERARREKISERMKILQDLVPGC----NKVIGKASVLDEIINYIQALQ 198
                     8*************************9....677*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    
MDPSSLISQS AMPEMWQFPM VGVSSAVRAT AAGLGHRDAS AGESTVTEQS VGNRSSKKRR  60
DSGPPAAAAN ALSEEDSSKF VSTSSGGIDL VFNLADSEAK LLKTGKSIDE NVESKVDAEA  120
TSGGNKLDQP SEPPKQDYIH VRARRGQATD SHSLAERARR EKISERMKIL QDLVPGCNKV  180
IGKASVLDEI INYIQALQRQ VEFLSMKLEA VDSRINTGLL EGFSSKDFGG QAYENVSGLA  240
YASQPSREYV QQGPATEWLH MQVGGAFERV TN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.12e-76bHLH family protein