PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020676776.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C2H2

Protein Properties

Length: 250aa MW: 25897.1 Da PI: 7.2914

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020676776.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.4	5.2e-05	86	108	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cgk F++ L H+ +H XP_020676776.1 86 HSCSVCGKAFPSYQALGGHMASH 108 79******************999 PP
2	zf-C2H2	11.8	0.00072	147	169	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C k+F++ L H r+H XP_020676776.1 147 HQCLICLKTFPTGQALGGHKRRH 169 79*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence
MAIDSVETAQ PPPAPTPASS STSSDESHVL HVEGWTKRKR SKRHPRFFDR APSEEEYLAF 60 CLLMLSRDAA AAAAASPLQP PQKLEHSCSV CGKAFPSYQA LGGHMASHRK PPPSAVAGGG 120 GGVDDRLSSG SPAASMVSSS SAGGKVHQCL ICLKTFPTGQ ALGGHKRRHY DGTIGSAVGA 180 GSGVGTSGGG AASSSSEAAS GGQRGFGLDL NMPPMMEFTF DIPRQCLEAE EEDEVQSPLP 240 FKKPHLLLMG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27730.1	4e-37	C2H2 family protein