PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020676861.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family LBD
Protein Properties Length: 175aa    MW: 19528.7 Da    PI: 9.4157
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020676861.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260130.66.6e-41241231100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +Ca+Ck+lrrkC++dC++ pyfp +qp+kf nvh++FGasnv+k+l++l++ ere+a++sl++eAe+r+rdP++G+vg+i+ lq++l+ql+ +l 
  XP_020676861.1  24 PCAGCKFLRRKCQQDCIFKPYFPPDQPQKFVNVHRVFGASNVSKILNELSPFEREAAVNSLFFEAEMRLRDPIKGCVGIISLLQRKLRQLQIDLF 118
                     7*******************************************************************************************999 PP

          DUF260  96 llkee 100
                     ++++e
  XP_020676861.1 119 TAQSE 123
                     88876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    
MESAVLKPIS SMAAGGQAVL ANTPCAGCKF LRRKCQQDCI FKPYFPPDQP QKFVNVHRVF  60
GASNVSKILN ELSPFEREAA VNSLFFEAEM RLRDPIKGCV GIISLLQRKL RQLQIDLFTA  120
QSELVKCQSQ LQQKQQQHQK MMMMRGYAAE MVGSFGRPSL AVGDDHQHNT LGAIS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23660.23e-51LBD family protein