PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020677108.2

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C3H

Protein Properties

Length: 742aa MW: 83855.7 Da PI: 7.1952

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020677108.2	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.5	1.7e-06	105	126	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+f++ G Ck+G+ C+ H XP_020677108.2 105 ECKFYLLPGGCKFGNDCRSLHH 126 7*****************9996 PP
2	zf-CCCH	28.3	3e-09	140	163	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C+f++rtG Ck+ + C+F+H+ XP_020677108.2 140 EKECPFYMRTGGCKFASHCRFHHP 163 689********************9 PP
3	zf-CCCH	27.8	4.3e-09	261	287	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f++tG+Ck+ + C+++H++ XP_020677108.2 261 PGEPECQYFMKTGYCKFKSACRYHHPK 287 5799*********************96 PP
4	zf-CCCH	27	7.7e-09	394	419	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + ++C++f++tG+Ck+ ++C+++H++ XP_020677108.2 394 GKPECQYFMKTGYCKFKATCRYHHPK 419 789*********************96 PP
5	zf-CCCH	25.9	1.7e-08	535	560	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + ++C+ff++tG+Ck+ + C+++H++ XP_020677108.2 535 GKPECQFFMKTGQCKFKSACRYHHPK 560 789*********************96 PP
6	zf-CCCH	24.8	3.8e-08	678	702	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++Cr+f++tG+Ck + C+++H++ XP_020677108.2 678 EPECRYFMKTGHCKLKSACRYHHPK 702 799********************96 PP
7	zf-CCCH	22.1	2.7e-07	715	738	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 + ++C ++ r G+Ck+G+ C+++H XP_020677108.2 715 DKPICTYYGR-GICKFGSACRYSHH 738 6799****.***********7 PP

Sequence ? help Back to Top
Protein Sequence Length: 742 aa Download sequence
MVKLSLGLLS LFKNINLGFG HPHMPMTTST GTMEDKEFTK VEQDNKMGLA GDHREITAVE 60 KDTRIRSDET GSDTFVMDRK FNHPLREGAR GPENITSSEN VGQIECKFYL LPGGCKFGND 120 CRSLHHVRLN FLGLPIRLGE KECPFYMRTG GCKFASHCRF HHPDPTAVIG DSFQDLKNGV 180 PSQHHVLAEQ LCETPMPSEN PSNEQTDFLG PFTPNRGFQE NVHRKGNQTT TSPLHSREMN 240 INDQRQILAN RDTAEEYPQR PGEPECQYFM KTGYCKFKSA CRYHHPKSNV SFLGLPQRSS 300 SQQLRETPLP SENTSKEQTA FLGPSSSYVP DLFTPSHGLK TNAQWNGSQS VTNLLHPSEI 360 KIVDQQQEFV KRDPAYEFSG GEPQQYDAYP QRPGKPECQY FMKTGYCKFK ATCRYHHPKS 420 NLSFLGLPLR PASNDCKQDG PVEQICEVPL SSEDASNDQR AFLCPSSSDV QSLFTPIQGI 480 QPNVQWNVDQ AVTSLLYPQE TKIINHQQEL ASKDAAYEFS GGEPQQHDEY PQRPGKPECQ 540 FFMKTGQCKF KSACRYHHPK SNLSFPSLPL RSASNNYEQN GSSEQLSEIP LSSENALNDQ 600 RTVLSPSSSN VQGLFTPEQG LWTTQQWNGD QMATNPLHPP EIKKNEEKHE LANTDTAYDL 660 NGGVKSQQLD EYPQRPNEPE CRYFMKTGHC KLKSACRYHH PKSNRSLLTP PLKPDKPICT 720 YYGRGICKFG SACRYSHHME HT

Sequence ? help Back to Top

Protein Sequence Length: 742 aa Download sequence

MVKLSLGLLS LFKNINLGFG HPHMPMTTST GTMEDKEFTK VEQDNKMGLA GDHREITAVE  60
KDTRIRSDET GSDTFVMDRK FNHPLREGAR GPENITSSEN VGQIECKFYL LPGGCKFGND  120
CRSLHHVRLN FLGLPIRLGE KECPFYMRTG GCKFASHCRF HHPDPTAVIG DSFQDLKNGV  180
PSQHHVLAEQ LCETPMPSEN PSNEQTDFLG PFTPNRGFQE NVHRKGNQTT TSPLHSREMN  240
INDQRQILAN RDTAEEYPQR PGEPECQYFM KTGYCKFKSA CRYHHPKSNV SFLGLPQRSS  300
SQQLRETPLP SENTSKEQTA FLGPSSSYVP DLFTPSHGLK TNAQWNGSQS VTNLLHPSEI  360
KIVDQQQEFV KRDPAYEFSG GEPQQYDAYP QRPGKPECQY FMKTGYCKFK ATCRYHHPKS  420
NLSFLGLPLR PASNDCKQDG PVEQICEVPL SSEDASNDQR AFLCPSSSDV QSLFTPIQGI  480
QPNVQWNVDQ AVTSLLYPQE TKIINHQQEL ASKDAAYEFS GGEPQQHDEY PQRPGKPECQ  540
FFMKTGQCKF KSACRYHHPK SNLSFPSLPL RSASNNYEQN GSSEQLSEIP LSSENALNDQ  600
RTVLSPSSSN VQGLFTPEQG LWTTQQWNGD QMATNPLHPP EIKKNEEKHE LANTDTAYDL  660
NGGVKSQQLD EYPQRPNEPE CRYFMKTGHC KLKSACRYHH PKSNRSLLTP PLKPDKPICT  720
YYGRGICKFG SACRYSHHME HT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63260.1	1e-37	C3H family protein