PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020677112.2

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

FAR1

Protein Properties

Length: 819aa MW: 95158 Da PI: 8.2644

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020677112.2	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	57.4	4.9e-18	51	138	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y +YA++vGFsvrk+++ + ++++i +++f sk g+++ + + k++ ++a+trtgC a+++ + +++g+ +v+k+ ++HnHela XP_020677112.2 51 IYYRYAHSVGFSVRKDHHCYWPNSRKIRMKDFLYSKAGFKKGLDLN-AKSKYRKANTRTGCPAMIRFSVDQEGECKVNKCIENHNHELA 138 799*************************************9999.8999999*******************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 819 aa Download sequence
MDSVPEEMND WSEMEGFTQE SELRGGDVPL GISRYRSVLV VCNSEKEAYD IYYRYAHSVG 60 FSVRKDHHCY WPNSRKIRMK DFLYSKAGFK KGLDLNAKSK YRKANTRTGC PAMIRFSVDQ 120 EGECKVNKCI ENHNHELARP EDQHLLRSCR KITEERAFVL KSMADAGIRT IDAFTYLADE 180 VGGREYVGFL RRDAYNFVQR NRRCKIETGD KNSLIEIFKN RAKNDNMFVW EVQYDEEDRL 240 MNFFWADGVG RIDYDCFGDI IIFDTSYRLN KYNLACAPFV GVNNHWQNVL LGVAFLSEET 300 VESFTWLFRT FLRVMGGKHP ITIFTDQDQA MSHAIQIAFP QTRHRLCQWH IMKKLPSKVH 360 CYNSNNKVRG LIYKCFSKCD SEEEFESTWT EMLNEGDLHS HEWLKELHKI RHKWSTTYNK 420 TCFNLGILST QRSESTNNVC HGISKPTSTI TECFLGLEKV MKTWRRNEKD EDFKCSQSDV 480 VPLVKSSPIL RQAARFYSRK LYSFFEEEFL QGVGGMCITQ ASTDLSTFFV KTVENIDQPR 540 HWTVNFDDAE GSIECSCGKF GMMGILCSHY LRVIRRLDII NIPPKYLLKR WSGRARKDLY 600 SNRPLSSMVA TGCPSDGIGS MIFKNYFTRF AYQISSRGEG NTEAEQYMID AMYEIVENVD 660 LILNASKDSN LDTNSSMRTK IKDPIKRRPK GVSNARLKSY WEKRKPKRKK AEEQPTPSTH 720 QPTPVEHSSQ VYFANIPEYY ASTQQPTPAE PSSQVSFANI PDYFASTHQQ THVERFGHVP 780 FLKIPECFTD EWLLRRPTSQ PNPKYLNMMN EFIDAERLG

Sequence ? help Back to Top

Protein Sequence Length: 819 aa Download sequence

MDSVPEEMND WSEMEGFTQE SELRGGDVPL GISRYRSVLV VCNSEKEAYD IYYRYAHSVG  60
FSVRKDHHCY WPNSRKIRMK DFLYSKAGFK KGLDLNAKSK YRKANTRTGC PAMIRFSVDQ  120
EGECKVNKCI ENHNHELARP EDQHLLRSCR KITEERAFVL KSMADAGIRT IDAFTYLADE  180
VGGREYVGFL RRDAYNFVQR NRRCKIETGD KNSLIEIFKN RAKNDNMFVW EVQYDEEDRL  240
MNFFWADGVG RIDYDCFGDI IIFDTSYRLN KYNLACAPFV GVNNHWQNVL LGVAFLSEET  300
VESFTWLFRT FLRVMGGKHP ITIFTDQDQA MSHAIQIAFP QTRHRLCQWH IMKKLPSKVH  360
CYNSNNKVRG LIYKCFSKCD SEEEFESTWT EMLNEGDLHS HEWLKELHKI RHKWSTTYNK  420
TCFNLGILST QRSESTNNVC HGISKPTSTI TECFLGLEKV MKTWRRNEKD EDFKCSQSDV  480
VPLVKSSPIL RQAARFYSRK LYSFFEEEFL QGVGGMCITQ ASTDLSTFFV KTVENIDQPR  540
HWTVNFDDAE GSIECSCGKF GMMGILCSHY LRVIRRLDII NIPPKYLLKR WSGRARKDLY  600
SNRPLSSMVA TGCPSDGIGS MIFKNYFTRF AYQISSRGEG NTEAEQYMID AMYEIVENVD  660
LILNASKDSN LDTNSSMRTK IKDPIKRRPK GVSNARLKSY WEKRKPKRKK AEEQPTPSTH  720
QPTPVEHSSQ VYFANIPEYY ASTQQPTPAE PSSQVSFANI PDYFASTHQQ THVERFGHVP  780
FLKIPECFTD EWLLRRPTSQ PNPKYLNMMN EFIDAERLG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-96	FAR1 family protein