PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020677121.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

Protein Properties

Length: 639aa MW: 70450.4 Da PI: 4.9454

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020677121.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	34.4	3.8e-11	46	113	15	86
-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 l +p a + +g +k + +ed g+ W+vk+ + +g+ +++GW +Fv+++ + +g+fv+F+++g XP_020677121.1 46 VLFIPPMAACTLKGL--AKKYVYIEDAFGKYWNVKM--SMVDGSLAFQNGWCDFVSDHCITVGEFVLFTYTG 113 466776666455333..3457*************..88889999*********************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 639 aa Download sequence
MQASLELSAA TLMKKRGRKP SSRSPPPLNT CPLSFFKVLL GDFKDVLFIP PMAACTLKGL 60 AKKYVYIEDA FGKYWNVKMS MVDGSLAFQN GWCDFVSDHC ITVGEFVLFT YTGGLIFAAR 120 IFGTNALERV NFKVKRRRGI AKERCITELK PGNVRTSKRK KTAQPSEEQH SPFGTEVQRS 180 LKRKQKAVKC DFPKVHVIES DSISEGVLEL SSAGEKPLYD SNSKESENAL LDSEQTWHKN 240 SDATVGELNI KSPSDLANSD LENIEAVSSK SIINRMSTSE NGAAFRDIGG VLPSKQTAEE 300 PDAMTKTSTW AVKGHSDNKE WSAEISGSQV QMNKEDDDIR NNGKTEQGLS HDLEMLDREP 360 PDMKMASLSN LKHAECSPKM EFNLIKPEVI SEIDSGSQVQ MKKEHDAIIN NGKTEQGLSH 420 DLEMLDSESN YMKIASLSNL EHAECSPKME LNLIKPEEIS EMVFLSADAI CHPTLDEKLI 480 ELATGASFNA NELEEPLCGN FHGSFDLETS VPCQNISAVS SNPILNHTID KMENLMIISE 540 EYGVSQTTGS STIAESGLQS CNKVHECKYK SYPEIVKGSD CQSGIADDTF FDEDEKNVTP 600 CSSRRCKVKI DRSESVDIPS SSCVGFSICL SDDVQSSLA

Sequence ? help Back to Top

Protein Sequence Length: 639 aa Download sequence

MQASLELSAA TLMKKRGRKP SSRSPPPLNT CPLSFFKVLL GDFKDVLFIP PMAACTLKGL  60
AKKYVYIEDA FGKYWNVKMS MVDGSLAFQN GWCDFVSDHC ITVGEFVLFT YTGGLIFAAR  120
IFGTNALERV NFKVKRRRGI AKERCITELK PGNVRTSKRK KTAQPSEEQH SPFGTEVQRS  180
LKRKQKAVKC DFPKVHVIES DSISEGVLEL SSAGEKPLYD SNSKESENAL LDSEQTWHKN  240
SDATVGELNI KSPSDLANSD LENIEAVSSK SIINRMSTSE NGAAFRDIGG VLPSKQTAEE  300
PDAMTKTSTW AVKGHSDNKE WSAEISGSQV QMNKEDDDIR NNGKTEQGLS HDLEMLDREP  360
PDMKMASLSN LKHAECSPKM EFNLIKPEVI SEIDSGSQVQ MKKEHDAIIN NGKTEQGLSH  420
DLEMLDSESN YMKIASLSNL EHAECSPKME LNLIKPEEIS EMVFLSADAI CHPTLDEKLI  480
ELATGASFNA NELEEPLCGN FHGSFDLETS VPCQNISAVS SNPILNHTID KMENLMIISE  540
EYGVSQTTGS STIAESGLQS CNKVHECKYK SYPEIVKGSD CQSGIADDTF FDEDEKNVTP  600
CSSRRCKVKI DRSESVDIPS SSCVGFSICL SDDVQSSLA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	158	186	KRKKTAQPSEEQHSPFGTEVQRSLKRKQK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66980.1	3e-09	B3 family protein