PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020677354.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family M-type_MADS
Protein Properties Length: 184aa    MW: 21143.8 Da    PI: 4.8021
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020677354.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF75.63.8e-242066147
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                    krie++ +rqv fskRr+g++KKA+ELS+LC++evav+ifs+ gk y
  XP_020677354.1 20 KRIEEEQKRQVCFSKRRQGLFKKASELSTLCGVEVAVVIFSPAGKPY 66
                    79******************************************976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    
MNPAEVKKKR GKGRRKIEIK RIEEEQKRQV CFSKRRQGLF KKASELSTLC GVEVAVVIFS  60
PAGKPYFFGQ PSIDHVLNHF LNAGPNPSNQ DEPMNHDQSA GDQSFWWDID PHSMGVVELR  120
EYQEILAEQQ SVVIQAAQQC YLQAPPEAAM EQIEALPHTY PEVGEDDYFL CWQQDYDFQD  180
IVPF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-21M-type_MADS family protein