PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020677448.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

HSF

Protein Properties

Length: 456aa MW: 50341.4 Da PI: 4.7626

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020677448.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	113.8	1.1e-35	18	110	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k+y++++d+++++++sw +n+fvv+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+k++ ++ weF+++ F +++k+ll++ XP_020677448.1 18 FLSKTYDMVDDPTTDSIVSWGPGNNTFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIDPDR---------WEFANEGFLRDQKHLLKN 103 9*******************99*************************************999.........************** PP XXXXXXX CS HSF_DNA-bind 97 ikrkkse 103 i+rkk++ XP_020677448.1 104 INRKKTS 110 **986 PP

Sequence ? help Back to Top
Protein Sequence Length: 456 aa Download sequence
MEGGSSGAVL AGGGPPPFLS KTYDMVDDPT TDSIVSWGPG NNTFVVWNPP EFARDLLPKY 60 FKHNNFSSFV RQLNTYGFRK IDPDRWEFAN EGFLRDQKHL LKNINRKKTS HAHTQPQALP 120 QNTSVTSCVE VGKFGLDEEI ERLKRDKNVL MQELVRLRQQ QQTTDNQLQV LNKRIQGMEQ 180 RQQQMMSFLA KAMNSPGFLA QLVQQNNSNN QLISGGTKKR RLPNQEEFQA ESASRDGQII 240 KYQPLMTDAA KSMLMQILTS ETSPRLDSYN KPDALDSSRS CSSRSSGVTF QEVPLSSAMQ 300 FVPANSVVSA VCSPSALSEI QSSPIVTDPG NYNLPQPDLG FPDQIPTMSY AASEAESAFV 360 QSIAGLDGMI PLDLEKFSGD ADIDVFSDGD DGTKLPGIVD SFWEQFLSAS PISVDNEEVN 420 SSLPEAKVQG RGWDGVHNMD NLTEQMGLLA SKSKVL

Sequence ? help Back to Top

Protein Sequence Length: 456 aa Download sequence

MEGGSSGAVL AGGGPPPFLS KTYDMVDDPT TDSIVSWGPG NNTFVVWNPP EFARDLLPKY  60
FKHNNFSSFV RQLNTYGFRK IDPDRWEFAN EGFLRDQKHL LKNINRKKTS HAHTQPQALP  120
QNTSVTSCVE VGKFGLDEEI ERLKRDKNVL MQELVRLRQQ QQTTDNQLQV LNKRIQGMEQ  180
RQQQMMSFLA KAMNSPGFLA QLVQQNNSNN QLISGGTKKR RLPNQEEFQA ESASRDGQII  240
KYQPLMTDAA KSMLMQILTS ETSPRLDSYN KPDALDSSRS CSSRSSGVTF QEVPLSSAMQ  300
FVPANSVVSA VCSPSALSEI QSSPIVTDPG NYNLPQPDLG FPDQIPTMSY AASEAESAFV  360
QSIAGLDGMI PLDLEKFSGD ADIDVFSDGD DGTKLPGIVD SFWEQFLSAS PISVDNEEVN  420
SSLPEAKVQG RGWDGVHNMD NLTEQMGLLA SKSKVL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32330.1	1e-106	HSF family protein